Alex Morgan

A self-supervised model that infers gene-regulatory programs from 30M single-cell measurements, transferring across tissues and species.

An attention scheme with O(n log n) complexity for genomic data up to 1Mb, with downstream improvements on enhancer prediction.

Field notes on environments, container hygiene, and data versioning that have saved me from re-running experiments at 2am.

Notes from the cross-disciplinary trenches: confounders, batch effects, and why a 99% accurate classifier is often useless.

A toolkit for querying and visualizing single-cell atlases at million-cell scale, with cross-dataset query in <200ms.

Flow-matching model for protein backbone generation conditioned on functional constraints. Beats RFDiffusion on small folds.

Local-first markdown editor with embedded LLM autocomplete. Runs entirely in-browser via WebGPU.

A small command-line tool for managing experiment configs, runs, and results. Used daily in our lab.